Composition & Functional Overview
2024-01-25
Taxonomic composition
Alpha diversity
Alpha diversity means by sample type
| Daneborg | Ittoqqortoormii | |
|---|---|---|
| Richness mean | 233.103 | 232.138 |
| Richness sd | 48.115 | 44.915 |
| Neutral mean | 102.846 | 96.607 |
| Neutral sd | 20.952 | 37.606 |
| Phylogenetic mean | 5.129 | 5.936 |
| Phylogenetic sd | 0.812 | 1.382 |
| Functional mean | 1.423 | 1.453 |
| Functional sd | 0.034 | 0.058 |
Plot diversities
Beta diversity
Neutral beta diversity
Homogeneity of variance
Permutation test for homogeneity of multivariate dispersions
Permutation: free
Number of permutations: 999
Response: Distances
Df Sum Sq Mean Sq F N.Perm Pr(>F)
Groups 1 0.06203 0.062033 2.7774 999 0.096 .
Residuals 56 1.25076 0.022335
---
Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
Pairwise comparisons:
(Observed p-value below diagonal, permuted p-value above diagonal)
Daneborg Ittoqqortoormii
Daneborg 0.095
Ittoqqortoormii 0.10119 Permanova
| Df | SumOfSqs | R2 | F | Pr(>F) | |
|---|---|---|---|---|---|
| region | 1 | 2.376 | 0.288 | 22.631 | 0.001 |
| sex | 2 | 0.200 | 0.024 | 0.951 | 0.461 |
| Residual | 54 | 5.670 | 0.688 | NA | NA |
| Total | 57 | 8.245 | 1.000 | NA | NA |
Phylogenetic beta diversity
Homogeneity of variance
Permutation test for homogeneity of multivariate dispersions
Permutation: free
Number of permutations: 999
Response: Distances
Df Sum Sq Mean Sq F N.Perm Pr(>F)
Groups 1 0.02909 0.029089 2.7299 999 0.113
Residuals 56 0.59672 0.010656
Pairwise comparisons:
(Observed p-value below diagonal, permuted p-value above diagonal)
Daneborg Ittoqqortoormii
Daneborg 0.111
Ittoqqortoormii 0.10408 Permanova
| Df | SumOfSqs | R2 | F | Pr(>F) | |
|---|---|---|---|---|---|
| region | 1 | 0.139 | 0.102 | 6.326 | 0.001 |
| sex | 2 | 0.042 | 0.031 | 0.964 | 0.363 |
| Residual | 54 | 1.184 | 0.867 | NA | NA |
| Total | 57 | 1.365 | 1.000 | NA | NA |
Functional beta diversity
Homogeneity of variance
Permutation test for homogeneity of multivariate dispersions
Permutation: free
Number of permutations: 999
Response: Distances
Df Sum Sq Mean Sq F N.Perm Pr(>F)
Groups 1 0.001164 0.0011635 0.2775 999 0.654
Residuals 56 0.234777 0.0041924
Pairwise comparisons:
(Observed p-value below diagonal, permuted p-value above diagonal)
Daneborg Ittoqqortoormii
Daneborg 0.654
Ittoqqortoormii 0.60041 Permanova
| Df | SumOfSqs | R2 | F | Pr(>F) | |
|---|---|---|---|---|---|
| region | 1 | 0.016 | 0.043 | 2.521 | 0.187 |
| Residual | 56 | 0.363 | 0.957 | NA | NA |
| Total | 57 | 0.379 | 1.000 | NA | NA |
Community elements differences
Elements Daneborg Ittoqqortoormii
1 B0102 6.213917e-01 0.6542339000
2 B0104 3.624024e-01 0.3875831000
3 B0106 5.703835e-01 0.5933152000
4 B0206 6.065891e-01 0.6660740000
5 B0218 1.990145e-01 0.2166382000
6 B0302 3.068100e-03 0.0072159210
7 B0303 1.871648e-01 0.2036971000
8 B0307 2.617061e-01 0.2939162000
9 B0309 1.937427e-02 0.0334637500
10 B0402 4.552325e-01 0.4821769000
11 B0602 5.290171e-01 0.5962060000
12 B0603 2.322757e-01 0.2536413000
13 B0604 4.977149e-01 0.5765179000
14 B0708 3.228590e-01 0.3741546000
15 B0710 4.862160e-02 0.0881641200
16 B0801 2.299540e-03 0.0044826700
17 B0803 5.185493e-01 0.5575399000
18 B0804 5.683050e-01 0.5991183000
19 B0805 1.173271e-01 0.1265427000
20 B0902 1.099185e-04 0.0011838331
21 B1028 5.437181e-03 0.0069250780
22 D0103 4.272209e-02 0.0564869200
23 D0104 6.526548e-02 0.1093709200
24 D0201 9.813421e-02 0.1112948800
25 D0202 2.083721e-01 0.2327253000
26 D0203 3.081105e-01 0.3256287000
27 D0205 7.798160e-02 0.0949630900
28 D0210 1.514472e-01 0.1737191000
29 D0211 3.413817e-02 0.0472299600
30 D0305 2.406657e-01 0.2798041000
31 D0306 8.412287e-02 0.1241437100
32 D0307 1.223864e-01 0.1426387000
33 D0308 1.118938e-01 0.1632912000
34 D0505 2.234881e-01 0.2836537000
35 D0507 1.070622e-01 0.1201849000
36 D0508 2.028767e-02 0.0234738300
37 D0516 2.985094e-03 0.0049452740
38 D0517 5.851843e-03 0.0110999140
39 D0602 3.902806e-02 0.0736939500
40 D0603 1.020694e-03 0.0035797750
41 D0604 5.846614e-01 0.6248994000
42 D0607 1.526302e-02 0.0375491100
43 D0609 1.152717e-01 0.1412565000
44 D0612 1.201170e-02 0.0182958700
45 D0613 2.296306e-01 0.3110825000
46 D0701 7.273846e-03 0.0726485820
47 D0704 4.898553e-01 0.5382322000
48 D0705 2.665007e-01 0.2856324000
49 D0801 4.451051e-05 0.0007688072
50 D0802 9.233852e-05 0.0005095938
51 D0805 0.000000e+00 0.0004566461
52 D0816 4.294600e-02 0.0489279300
53 D0817 8.035418e-03 0.0114091500
54 D0901 1.874836e-01 0.2801520000
55 D0903 9.152559e-03 0.0221558940
56 D0905 1.142874e-01 0.1691851000
57 D0907 5.158029e-01 0.5982031000
58 S0103 2.190539e-01 0.2531521000
59 S0301 2.763855e-01 0.2980310000
Function
1 Nucleic acid biosynthesis_Uridylic acid (UMP)
2 Nucleic acid biosynthesis_CDP/CTP
3 Nucleic acid biosynthesis_GDP/GTP
4 Amino acid biosynthesis_Cysteine
5 Amino acid biosynthesis_Tyrosine
6 Amino acid derivative biosynthesis_Betaine
7 Amino acid derivative biosynthesis_Ectoine
8 Amino acid derivative biosynthesis_Spermidine
9 Amino acid derivative biosynthesis_Putrescine
10 SCFA biosynthesis_Butyrate
11 Organic anion biosynthesis_Fumarate
12 Organic anion biosynthesis_Citrate
13 Organic anion biosynthesis_L-lactate
14 Vitamin biosynthesis_Cobalamin (B12)
15 Vitamin biosynthesis_Phylloquinone (K1)
16 Aromatic compound biosynthesis_Salicylate
17 Aromatic compound biosynthesis_Chorismate
18 Aromatic compound biosynthesis_Dipicolinate
19 Aromatic compound biosynthesis_Indole-3-acetate
20 Metallophore biosynthesis_Aerobactin
21 Antibiotic biosynthesis_Pyocyanin
22 Lipid degradation_Oleate
23 Lipid degradation_Dicarboxylic acids
24 Polysaccharide degradation_Cellulose
25 Polysaccharide degradation_Xyloglucan
26 Polysaccharide degradation_Starch
27 Polysaccharide degradation_Pectin
28 Polysaccharide degradation_Beta-mannan
29 Polysaccharide degradation_Alpha-mannan
30 Sugar degradation_D-Mannose
31 Sugar degradation_D-Xylose
32 Sugar degradation_L-Fucose
33 Sugar degradation_L-Rhamnose
34 Amino acid degradation_Valine
35 Amino acid degradation_Leucine
36 Amino acid degradation_Lysine
37 Amino acid degradation_Beta-alanine
38 Amino acid degradation_Ornithine
39 Nitrogen compound degradation_Urea
40 Nitrogen compound degradation_Urate
41 Nitrogen compound degradation_GlcNAc
42 Nitrogen compound degradation_Creatinine
43 Nitrogen compound degradation_L-carnitine
44 Nitrogen compound degradation_Hypotaurine
45 Nitrogen compound degradation_Taurine
46 Alcohol degradation_2,3-Butanediol
47 Alcohol degradation_Glycerol
48 Alcohol degradation_Propylene glycol
49 Xenobiotic degradation_Toluene
50 Xenobiotic degradation_Xylene
51 Xenobiotic degradation_Benzoate
52 Xenobiotic degradation_Phenylacetate
53 Xenobiotic degradation_Trans-cinnamate
54 Antibiotic degradation_Penicillin
55 Antibiotic degradation_Cephalosporin
56 Antibiotic degradation_Streptogramin
57 Antibiotic degradation_Tetracycline
58 Cellular structure_Teichoic acid
59 Spore_Spore
Community functions differences
Code_function Daneborg Ittoqqortoormii Function
1 B04 0.47854210 0.50552280 SCFA biosynthesis
2 D01 0.04352762 0.05604046 Lipid degradation
3 D02 0.20397760 0.22286130 Polysaccharide degradation
4 D07 0.28809830 0.33241360 Alcohol degradation
5 D09 0.14187380 0.16267520 Antibiotic degradation
6 S03 0.22296800 0.27174760 Spore
Community domains differences
No differences