Taxonomic composition

Alpha diversity

Alpha diversity means by sample type

Daneborg Ittoqqortoormii
Richness mean 233.103 232.138
Richness sd 48.115 44.915
Neutral mean 102.846 96.607
Neutral sd 20.952 37.606
Phylogenetic mean 5.129 5.936
Phylogenetic sd 0.812 1.382
Functional mean 1.423 1.453
Functional sd 0.034 0.058

Plot diversities

Beta diversity

Neutral beta diversity

Homogeneity of variance


Permutation test for homogeneity of multivariate dispersions
Permutation: free
Number of permutations: 999

Response: Distances
          Df  Sum Sq  Mean Sq      F N.Perm Pr(>F)  
Groups     1 0.06203 0.062033 2.7774    999  0.096 .
Residuals 56 1.25076 0.022335                       
---
Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1

Pairwise comparisons:
(Observed p-value below diagonal, permuted p-value above diagonal)
                Daneborg Ittoqqortoormii
Daneborg                           0.095
Ittoqqortoormii  0.10119                

Permanova

Df SumOfSqs R2 F Pr(>F)
region 1 2.376 0.288 22.631 0.001
sex 2 0.200 0.024 0.951 0.461
Residual 54 5.670 0.688 NA NA
Total 57 8.245 1.000 NA NA

Phylogenetic beta diversity

Homogeneity of variance


Permutation test for homogeneity of multivariate dispersions
Permutation: free
Number of permutations: 999

Response: Distances
          Df  Sum Sq  Mean Sq      F N.Perm Pr(>F)
Groups     1 0.02909 0.029089 2.7299    999  0.113
Residuals 56 0.59672 0.010656                     

Pairwise comparisons:
(Observed p-value below diagonal, permuted p-value above diagonal)
                Daneborg Ittoqqortoormii
Daneborg                           0.111
Ittoqqortoormii  0.10408                

Permanova

Df SumOfSqs R2 F Pr(>F)
region 1 0.139 0.102 6.326 0.001
sex 2 0.042 0.031 0.964 0.363
Residual 54 1.184 0.867 NA NA
Total 57 1.365 1.000 NA NA

Functional beta diversity

Homogeneity of variance


Permutation test for homogeneity of multivariate dispersions
Permutation: free
Number of permutations: 999

Response: Distances
          Df   Sum Sq   Mean Sq      F N.Perm Pr(>F)
Groups     1 0.001164 0.0011635 0.2775    999  0.654
Residuals 56 0.234777 0.0041924                     

Pairwise comparisons:
(Observed p-value below diagonal, permuted p-value above diagonal)
                Daneborg Ittoqqortoormii
Daneborg                           0.654
Ittoqqortoormii  0.60041                

Permanova

Df SumOfSqs R2 F Pr(>F)
region 1 0.016 0.043 2.521 0.187
Residual 56 0.363 0.957 NA NA
Total 57 0.379 1.000 NA NA

Community elements differences

   Elements     Daneborg Ittoqqortoormii
1     B0102 6.213917e-01    0.6542339000
2     B0104 3.624024e-01    0.3875831000
3     B0106 5.703835e-01    0.5933152000
4     B0206 6.065891e-01    0.6660740000
5     B0218 1.990145e-01    0.2166382000
6     B0302 3.068100e-03    0.0072159210
7     B0303 1.871648e-01    0.2036971000
8     B0307 2.617061e-01    0.2939162000
9     B0309 1.937427e-02    0.0334637500
10    B0402 4.552325e-01    0.4821769000
11    B0602 5.290171e-01    0.5962060000
12    B0603 2.322757e-01    0.2536413000
13    B0604 4.977149e-01    0.5765179000
14    B0708 3.228590e-01    0.3741546000
15    B0710 4.862160e-02    0.0881641200
16    B0801 2.299540e-03    0.0044826700
17    B0803 5.185493e-01    0.5575399000
18    B0804 5.683050e-01    0.5991183000
19    B0805 1.173271e-01    0.1265427000
20    B0902 1.099185e-04    0.0011838331
21    B1028 5.437181e-03    0.0069250780
22    D0103 4.272209e-02    0.0564869200
23    D0104 6.526548e-02    0.1093709200
24    D0201 9.813421e-02    0.1112948800
25    D0202 2.083721e-01    0.2327253000
26    D0203 3.081105e-01    0.3256287000
27    D0205 7.798160e-02    0.0949630900
28    D0210 1.514472e-01    0.1737191000
29    D0211 3.413817e-02    0.0472299600
30    D0305 2.406657e-01    0.2798041000
31    D0306 8.412287e-02    0.1241437100
32    D0307 1.223864e-01    0.1426387000
33    D0308 1.118938e-01    0.1632912000
34    D0505 2.234881e-01    0.2836537000
35    D0507 1.070622e-01    0.1201849000
36    D0508 2.028767e-02    0.0234738300
37    D0516 2.985094e-03    0.0049452740
38    D0517 5.851843e-03    0.0110999140
39    D0602 3.902806e-02    0.0736939500
40    D0603 1.020694e-03    0.0035797750
41    D0604 5.846614e-01    0.6248994000
42    D0607 1.526302e-02    0.0375491100
43    D0609 1.152717e-01    0.1412565000
44    D0612 1.201170e-02    0.0182958700
45    D0613 2.296306e-01    0.3110825000
46    D0701 7.273846e-03    0.0726485820
47    D0704 4.898553e-01    0.5382322000
48    D0705 2.665007e-01    0.2856324000
49    D0801 4.451051e-05    0.0007688072
50    D0802 9.233852e-05    0.0005095938
51    D0805 0.000000e+00    0.0004566461
52    D0816 4.294600e-02    0.0489279300
53    D0817 8.035418e-03    0.0114091500
54    D0901 1.874836e-01    0.2801520000
55    D0903 9.152559e-03    0.0221558940
56    D0905 1.142874e-01    0.1691851000
57    D0907 5.158029e-01    0.5982031000
58    S0103 2.190539e-01    0.2531521000
59    S0301 2.763855e-01    0.2980310000
                                          Function
1    Nucleic acid biosynthesis_Uridylic acid (UMP)
2                Nucleic acid biosynthesis_CDP/CTP
3                Nucleic acid biosynthesis_GDP/GTP
4                 Amino acid biosynthesis_Cysteine
5                 Amino acid biosynthesis_Tyrosine
6       Amino acid derivative biosynthesis_Betaine
7       Amino acid derivative biosynthesis_Ectoine
8    Amino acid derivative biosynthesis_Spermidine
9    Amino acid derivative biosynthesis_Putrescine
10                      SCFA biosynthesis_Butyrate
11             Organic anion biosynthesis_Fumarate
12              Organic anion biosynthesis_Citrate
13            Organic anion biosynthesis_L-lactate
14            Vitamin biosynthesis_Cobalamin (B12)
15         Vitamin biosynthesis_Phylloquinone (K1)
16       Aromatic compound biosynthesis_Salicylate
17       Aromatic compound biosynthesis_Chorismate
18     Aromatic compound biosynthesis_Dipicolinate
19 Aromatic compound biosynthesis_Indole-3-acetate
20            Metallophore biosynthesis_Aerobactin
21               Antibiotic biosynthesis_Pyocyanin
22                        Lipid degradation_Oleate
23            Lipid degradation_Dicarboxylic acids
24            Polysaccharide degradation_Cellulose
25           Polysaccharide degradation_Xyloglucan
26               Polysaccharide degradation_Starch
27               Polysaccharide degradation_Pectin
28          Polysaccharide degradation_Beta-mannan
29         Polysaccharide degradation_Alpha-mannan
30                     Sugar degradation_D-Mannose
31                      Sugar degradation_D-Xylose
32                      Sugar degradation_L-Fucose
33                    Sugar degradation_L-Rhamnose
34                   Amino acid degradation_Valine
35                  Amino acid degradation_Leucine
36                   Amino acid degradation_Lysine
37             Amino acid degradation_Beta-alanine
38                Amino acid degradation_Ornithine
39              Nitrogen compound degradation_Urea
40             Nitrogen compound degradation_Urate
41            Nitrogen compound degradation_GlcNAc
42        Nitrogen compound degradation_Creatinine
43       Nitrogen compound degradation_L-carnitine
44       Nitrogen compound degradation_Hypotaurine
45           Nitrogen compound degradation_Taurine
46              Alcohol degradation_2,3-Butanediol
47                    Alcohol degradation_Glycerol
48            Alcohol degradation_Propylene glycol
49                  Xenobiotic degradation_Toluene
50                   Xenobiotic degradation_Xylene
51                 Xenobiotic degradation_Benzoate
52            Xenobiotic degradation_Phenylacetate
53          Xenobiotic degradation_Trans-cinnamate
54               Antibiotic degradation_Penicillin
55            Antibiotic degradation_Cephalosporin
56            Antibiotic degradation_Streptogramin
57             Antibiotic degradation_Tetracycline
58                Cellular structure_Teichoic acid
59                                     Spore_Spore

Community functions differences

  Code_function   Daneborg Ittoqqortoormii                   Function
1           B04 0.47854210      0.50552280          SCFA biosynthesis
2           D01 0.04352762      0.05604046          Lipid degradation
3           D02 0.20397760      0.22286130 Polysaccharide degradation
4           D07 0.28809830      0.33241360        Alcohol degradation
5           D09 0.14187380      0.16267520     Antibiotic degradation
6           S03 0.22296800      0.27174760                      Spore

Community domains differences

No differences